The DNAStringSet-based version of the SequenceTrack class — SequenceDNAStringSetTrack-class • Gviz

The DNAStringSet-based version of the SequenceTrack class

# S4 method for class 'SequenceDNAStringSetTrack'
initialize(.Object, sequence, ...)

Arguments

.Object: The object skeleton passed on by new() during class instantiation, to be filled in by the initialize method.
sequence: A DNAStringSet object with one DNA sequence per chromosome. The names have to match the chromosome identifiers.
...: Additional arguments.

Functions

initialize(SequenceDNAStringSetTrack): Initialize the sequence slot (defaulting to an empty DNAStringSet if none is supplied) before deferring to the SequenceTrack initializer for the remaining slots.

Slots

sequence: A DNAStringSet object containing the sequence data, with one element per chromosome.