Function reference • Gviz

All functions
`initialize(<AlignmentsTrack>)` `initialize(<ReferenceAlignmentsTrack>)` `AlignmentsTrack()` `values(<AlignmentsTrack>)` `chromosome<-`(<AlignmentsTrack>) `stacks(<AlignmentsTrack>)` `setStacks(<AlignmentsTrack>)` `subset(<AlignmentsTrack>)` `subset(<ReferenceAlignmentsTrack>)` `drawAxis(<AlignmentsTrack>)` `drawGD(<AlignmentsTrack>)` `show(<AlignmentsTrack>)` `show(<ReferenceAlignmentsTrack>)`	AlignmentsTrack class and methods
`initialize(<BiomartGeneRegionTrack>)` `BiomartGeneRegionTrack()` `subset(<BiomartGeneRegionTrack>)`	BiomartGeneRegionTrack class and methods
`initialize(<CustomTrack>)` `CustomTrack()` `drawGD(<CustomTrack>)` `show(<CustomTrack>)`	CustomTrack class and methods
`DisplayPars()` `getPar()` `displayPars()` `as.list(<DisplayPars>)` `setPar()` `displayPars<-`() `show(<DisplayPars>)` `as.list(<InferredDisplayPars>)` `show(<InferredDisplayPars>)` `availableDisplayPars()`	DisplayPars: A class to control the plotting parameters for GdObjects
`initialize(<GeneRegionTrack>)` `initialize(<ReferenceGeneRegionTrack>)` `GeneRegionTrack()` `gene(<GeneRegionTrack>)` `gene<-`(<GeneRegionTrack>,<character>) `symbol(<GeneRegionTrack>)` `symbol<-`(<GeneRegionTrack>,<character>) `transcript(<GeneRegionTrack>)` `transcript<-`(<GeneRegionTrack>,<character>) `exon(<GeneRegionTrack>)` `exon<-`(<GeneRegionTrack>,<character>) `group(<GeneRegionTrack>)` `group<-`(<GeneRegionTrack>,<character>) `identifier(<GeneRegionTrack>)` `identifier<-`(<GeneRegionTrack>,<character>) `subset(<ReferenceGeneRegionTrack>)` `drawGD(<GeneRegionTrack>)` `show(<GeneRegionTrack>)` `show(<ReferenceGeneRegionTrack>)`	GeneRegionTrack class and methods
`Gviz-defunct`	Defunct functions in package `Gviz`
`Gviz-deprecated`	Deprecated functions in package `Gviz`
`initialize(<HighlightTrack>)` `HighlightTrack()` `displayPars<-`(<HighlightTrack>,<list>) `length(<HighlightTrack>)` `chromosome<-`(<HighlightTrack>) `setStacks(<HighlightTrack>)` `consolidateTrack(<HighlightTrack>)` `subset(<HighlightTrack>)` `show(<HighlightTrack>)`	HighlightTrack class and methods
`IdeogramTrack-class` `IdeogramTrack` `drawGD,IdeogramTrack-method` `end,IdeogramTrack-method` `end` `initialize,IdeogramTrack-method` `show,IdeogramTrack-method` `start,IdeogramTrack-method` `start` `subset,IdeogramTrack-method` `width,IdeogramTrack-method` `width` `length,IdeogramTrack-method` `[,IdeogramTrack-method` `[,IdeogramTrack,ANY,ANY-method` `[,IdeogramTrack,ANY,ANY,ANY-method` `chromosome` `genome` `position,IdeogramTrack-method`	IdeogramTrack class and methods
`drawAxis(<NumericTrack>)` `drawGrid(<NumericTrack>)`	NumericTrack class and methods
`initialize(<RangeTrack>)` `ranges(<RangeTrack>)` `range(<RangeTrack>)` `seqnames(<RangeTrack>)` `seqlevels(<RangeTrack>)` `seqinfo(<RangeTrack>)` `genome(<RangeTrack>)` `genome<-`(<RangeTrack>) `chromosome(<RangeTrack>)` `chromosome<-`(<RangeTrack>) `start(<RangeTrack>)` `start<-`(<RangeTrack>) `end(<RangeTrack>)` `end<-`(<RangeTrack>) `width(<RangeTrack>)` `width<-`(<RangeTrack>) `min(<RangeTrack>)` `max(<RangeTrack>)` `length(<RangeTrack>)` `strand(<RangeTrack>)` `strand<-`(<RangeTrack>,<ANY>) `position(<RangeTrack>)` `[`(<RangeTrack>,<ANY>,<ANY>,<ANY>) `subset(<RangeTrack>)` `split(<RangeTrack>,<ANY>)` `values(<RangeTrack>)` `feature(<RangeTrack>)` `feature<-`(<RangeTrack>,<character>) `consolidateTrack(<RangeTrack>)`	RangeTrack class and methods
`availableDefaultMapping()` `initialize(<ReferenceTrack>)`	ReferenceTrack class and methods
`initialize(<SequenceTrack>)` `SequenceTrack()` `RNASequenceTrack()` `initialize(<SequenceDNAStringSetTrack>)` `initialize(<SequenceRNAStringSetTrack>)` `initialize(<SequenceBSgenomeTrack>)` `initialize(<ReferenceSequenceTrack>)` `seqnames(<SequenceTrack>)` `seqnames(<SequenceBSgenomeTrack>)` `seqlevels(<SequenceTrack>)` `seqlevels(<SequenceBSgenomeTrack>)` `start(<SequenceTrack>)` `end(<SequenceTrack>)` `width(<SequenceTrack>)` `length(<SequenceTrack>)` `chromosome(<SequenceTrack>)` `chromosome<-`(<SequenceTrack>) `genome(<SequenceTrack>)` `consolidateTrack(<SequenceTrack>)` `drawGD(<SequenceTrack>)` `show(<SequenceBSgenomeTrack>)` `show(<SequenceDNAStringSetTrack>)` `show(<SequenceRNAStringSetTrack>)` `show(<ReferenceSequenceTrack>)`	SequenceTrack class and methods
`initialize(<StackedTrack>)` `stacking(<StackedTrack>)` `stacking<-`(<StackedTrack>,<character>) `stacks(<StackedTrack>)` `setStacks(<StackedTrack>)` `consolidateTrack(<StackedTrack>)` `[`(<StackedTrack>,<ANY>,<ANY>,<ANY>) `subset(<StackedTrack>)` `drawGD(<StackedTrack>)`	StackedTrack class and methods
`UcscTrack()`	Meta-constructor for Gviz tracks fetched directly from the various UCSC data sources.
`collapsing`	Dynamic content based on the available resolution
`datasets` `bmTrack` `cyp2b10` `idTrack` `biomTrack` `biomTrack2` `cpgIslands` `axTrack` `conservation` `ensGenes` `denseAnnTrack` `geneModels` `iTrack` `itrack` `idxTrack` `ideoTrack` `twoGroups` `from` `gcContent` `knownGenes` `refGenes` `snpLocations` `to` `ctrack` `geneDetails` `dtHoriz` `bmt`	Data sets
`exportTracks()`	Export Gviz tracks into an annotation file representation.
`grouping`	Grouping of annotation features
`plotTracks()`	The main plotting function for one or several Gviz tracks.
`settings` `addScheme` `getScheme`	Setting display parameters to control the look and feel of the plots

Reference

All functions