BiomartGeneRegionTrack class and methods
Source:R/BiomartGeneRegionTrack-class.R
BiomartGeneRegionTrack-class.RdA class to hold gene model data for a genomic region fetched dynamically from EBI's Biomart Ensembl data source.
# S4 method for class 'BiomartGeneRegionTrack'
initialize(
.Object,
start = NULL,
end = NULL,
biomart,
filter = list(),
range,
genome = NULL,
chromosome = NULL,
strand = NULL,
featureMap = NULL,
symbol = NULL,
gene = NULL,
transcript = NULL,
entrez = NULL,
...
)
BiomartGeneRegionTrack(
start = NULL,
end = NULL,
biomart,
chromosome = NULL,
strand,
genome = NULL,
stacking = "squish",
filters = list(),
featureMap = NULL,
name = "BiomartGeneRegionTrack",
symbol = NULL,
gene = NULL,
entrez = NULL,
transcript = NULL,
...
)
# S4 method for class 'BiomartGeneRegionTrack'
subset(x, from, to, chromosome, use.defaults = TRUE, ...)Arguments
- .Object
The object skeleton passed on by
new()during class instantiation, to be filled in by theinitializemethod.- start
An integer scalar with the genomic start coordinate for the gene model range.
- end
An integer scalar with the genomic end coordinate for the gene model range.
- biomart
An optional
Martobject providing access to the EBI Biomart webservice. By default the appropriate Ensembl data source is selected based on the provided genome and chromosome.- filter
A named
listof additional filters to be applied in the Biomart query.- range
A
GRangesobject with the genomic coordinates of the gene model items.- genome
The genome on which the track's ranges are defined. Usually this is a valid UCSC genome identifier, however this is not being formally checked at this point. If no mapping from genome to Biomart Ensembl data source is possible, the
biomartargument needs to be provided by the user.- chromosome
The chromosome on which the track's genomic ranges are defined. A valid UCSC chromosome identifier. Please note that at this stage only syntactic checking takes place, i.e., the argument value needs to be a single integer, numeric character or a character of the form
chrx, wherexmay be any possible string. The user has to make sure that the respective chromosome is indeed defined for the track's genome.- strand
Character scalar, the strand for which to fetch gene information from Biomart. One of
+,-, or+-.- featureMap
Named character vector or list to map between the fields in the Biomart data base and the features as they are used to construct the track. If multiple values are provided in a single list item, the package will use the first one that is defined in the selected Biomart.
- symbol, transcript, gene, entrez
Character vector giving one or several gene symbols, Ensembl transcript identifiers, Ensembl gene identifiers, or ENTREZ gene identifiers, respectively. The genomic locus of their gene model will be fetched from Biomart instead of providing explicit start and end coordinates.
- ...
Additional items which will all be interpreted as further display parameters. See
settingsand the "Display Parameters" section below for details.- stacking
The stacking type for overlapping items of the track. One of
c(hide, dense, squish, pack, full). Currently, only hide (do not show the track items), squish (make best use of the available space) and dense (no stacking at all) are implemented.- filters
A list of additional filters to be applied in the Biomart query. See
biomaRt::getBM()for details.- name
Character scalar of the track's name used in the title panel when plotting.
- x
A valid track object class name, or the object itself, in which case the class is derived directly from it.
- from, to
Numeric scalar, giving the range of genomic coordinates to limit the tracks in. Note that
fromcannot be larger thanto.- use.defaults
logical. Derive the subsetting range from the track's own defaults rather than usingfromandtoverbatim.
Value
The return value of the constructor function is a new object of class
BiomartGeneRegionTrack.
Details
A track containing all gene models in a particular region as fetched from
EBI's Biomart service. Usually the user does not have to take care of the
Biomart connection, which will be established automatically based on the
provided genome and chromosome information. However, for full flexibility a
valid Mart object may be passed on to the
constructor. Please note that this assumes a connection to one of the Ensembl
gene data sources, mapping the available query data back to the internal
object slots.
Functions
initialize(BiomartGeneRegionTrack): Initialize display parameters and translate the various id/filter arguments (symbol,gene,transcript,entrez,filter) into the internal biomaRt query filters before deferring to theGeneRegionTrackinitializer.BiomartGeneRegionTrack(): Constructor function forBiomartGeneRegionTrack-class.subset(BiomartGeneRegionTrack): subset aBiomartGeneRegionTrackby coordinates and sort if necessary.
Objects from the class
Objects can be created using the constructor function
BiomartGeneRegionTrack.
References
EBI Biomart webservice at https://www.biomart.org.
See also
Examples
## Construct the object
# \donttest{
# create biomaRt object first
library(biomaRt)
bm <- useEnsembl(
biomart = "ENSEMBL_MART_ENSEMBL",
dataset = "mmusculus_gene_ensembl"
)
#> Ensembl site unresponsive, trying asia mirror
# pass it to the `BiomartGeneRegionTrack`
bmTrack <- BiomartGeneRegionTrack(
start = 26682683, end = 26711643,
chromosome = 7, biomart = bm
)
# }
## Plotting
plotTracks(bmTrack)
## Track names
names(bmTrack)
#> [1] "BiomartGeneRegionTrack"
names(bmTrack) <- "foo"
plotTracks(bmTrack)
## Subsetting and splitting
subTrack <- subset(bmTrack, from = 26700000, to = 26705000)
length(subTrack)
#> [1] 0
## Selecting all features for the first transcript only
mytx <- sort(transcript(bmTrack))[[1]]
subTrack <- bmTrack[transcript(bmTrack) == mytx]
split(bmTrack, transcript(bmTrack))
#> $ENSMUST00000075552
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 11
#>
#> $ENSMUST00000207016
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 8
#>
#> $ENSMUST00000277984
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 4
#>
#> $ENSMUST00000277985
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 4
#>
#> $ENSMUST00000277986
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 3
#>
#> $ENSMUST00000277987
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 3
#>
#> $ENSMUST00000277988
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 3
#>
#> $ENSMUST00000277989
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 3
#>
#> $ENSMUST00000355538
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 2
#>
#> $ENSMUST00000355539
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 2
#>
#> $ENSMUST00000379603
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 3
#>
#> $ENSMUST00000379604
#> GeneRegionTrack 'foo'
#> | genome: mmusculus_gene_ensembl
#> | active chromosome: chr7
#> | annotation features: 2
#>
## Accessors
start(bmTrack)
#> [1] 26710082 26710104 26710594 26710594 26728506 26728515 26728531 26728987
#> [9] 26728987 26730161 26730161 26730527 26730527 26731912 26733451 26733451
#> [17] 26734036 26734036 26734736 26734736 26735890 26735890 26736072 26712114
#> [25] 26712116 26712517 26712517 26716098 26731751 26731757 26731764 26731767
#> [33] 26732887 26732887 26732887 26732887 26733982 26744497 26744498 26747900
#> [41] 26747900 26747925 26747925 26748392 26748392 26748392 26748392 26748392
end(bmTrack)
#> [1] 26710271 26710297 26710828 26710835 26728707 26728530 26728707 26729149
#> [9] 26729149 26730310 26730310 26730687 26732088 26732088 26733589 26733589
#> [17] 26734223 26734223 26734877 26734877 26736071 26736800 26736257 26712395
#> [25] 26712395 26712627 26712627 26716131 26732142 26732142 26732142 26732142
#> [33] 26732995 26732995 26732995 26732995 26734890 26744590 26744590 26748087
#> [41] 26748087 26748087 26748087 26748489 26748489 26748499 26748501 26748507
width(bmTrack)
#> [1] 190 194 235 242 202 16 177 163 163 150 150 161 1562 177 139
#> [16] 139 188 188 142 142 182 911 186 282 280 111 111 34 392 386
#> [31] 379 376 109 109 109 109 909 94 93 188 188 163 163 98 98
#> [46] 108 110 116
position(bmTrack)
#> [1] 26710176 26710200 26710711 26710714 26728606 26728522 26728619 26729068
#> [9] 26729068 26730236 26730236 26730607 26731308 26732000 26733520 26733520
#> [17] 26734130 26734130 26734806 26734806 26735980 26736345 26736164 26712254
#> [25] 26712256 26712572 26712572 26716114 26731946 26731950 26731953 26731954
#> [33] 26732941 26732941 26732941 26732941 26734436 26744544 26744544 26747994
#> [41] 26747994 26748006 26748006 26748440 26748440 26748446 26748446 26748450
width(subTrack) <- width(subTrack) + 100
strand(bmTrack)
#> [1] "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+" "+"
#> [20] "+" "+" "+" "+" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-" "-"
#> [39] "-" "-" "-" "-" "-" "-" "-" "-" "-" "-"
strand(subTrack) <- "-"
chromosome(bmTrack)
#> [1] "chr7"
chromosome(subTrack) <- "chr7"
genome(bmTrack)
#> [1] "mmusculus_gene_ensembl"
genome(subTrack) <- "mm10"
range(bmTrack)
#> IRanges object with 48 ranges and 0 metadata columns:
#> start end width
#> <integer> <integer> <integer>
#> [1] 26710082 26710271 190
#> [2] 26710104 26710297 194
#> [3] 26710594 26710828 235
#> [4] 26710594 26710835 242
#> [5] 26728506 26728707 202
#> ... ... ... ...
#> [44] 26748392 26748489 98
#> [45] 26748392 26748489 98
#> [46] 26748392 26748499 108
#> [47] 26748392 26748501 110
#> [48] 26748392 26748507 116
ranges(bmTrack)
#> GRanges object with 48 ranges and 7 metadata columns:
#> seqnames ranges strand | feature gene
#> <Rle> <IRanges> <Rle> | <character> <character>
#> [1] chr7 26710082-26710271 + | lncRNA ENSMUSG00000139804
#> [2] chr7 26710104-26710297 + | lncRNA ENSMUSG00000139804
#> [3] chr7 26710594-26710828 + | lncRNA ENSMUSG00000139804
#> [4] chr7 26710594-26710835 + | lncRNA ENSMUSG00000139804
#> [5] chr7 26728506-26728707 + | non_coding ENSMUSG00000060407
#> ... ... ... ... . ... ...
#> [44] chr7 26748392-26748489 - | lncRNA ENSMUSG00000126751
#> [45] chr7 26748392-26748489 - | lncRNA ENSMUSG00000126751
#> [46] chr7 26748392-26748499 - | lncRNA ENSMUSG00000126751
#> [47] chr7 26748392-26748501 - | lncRNA ENSMUSG00000126751
#> [48] chr7 26748392-26748507 - | lncRNA ENSMUSG00000126751
#> exon transcript symbol rank phase
#> <character> <character> <character> <numeric> <integer>
#> [1] ENSMUSE00001699671 ENSMUST00000355538 Gm73608 1 -1
#> [2] ENSMUSE00001699672 ENSMUST00000355539 Gm73608 1 -1
#> [3] ENSMUSE00001699669 ENSMUST00000355538 Gm73608 2 -1
#> [4] ENSMUSE00001699670 ENSMUST00000355539 Gm73608 2 -1
#> [5] ENSMUSE00001372531 ENSMUST00000207016 Cyp2a12 1 -1
#> ... ... ... ... ... ...
#> [44] ENSMUSE00001550907 ENSMUST00000277986 1 -1
#> [45] ENSMUSE00001550907 ENSMUST00000277988 1 -1
#> [46] ENSMUSE00001550909 ENSMUST00000277985 1 -1
#> [47] ENSMUSE00001550916 ENSMUST00000277987 1 -1
#> [48] ENSMUSE00001550914 ENSMUST00000277984 1 -1
#> -------
#> seqinfo: 1 sequence from mmusculus_gene_ensembl genome; no seqlengths
## Annotation
identifier(bmTrack)
#> [1] "Gm73608" "Gm73608" "Gm73608" "Gm73608" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [8] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [15] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [22] "Cyp2a12" "Cyp2a12" "Gm74043" "Gm74043" "Gm74043" "Gm74043" "Gm74043"
#> [29] "" "" "" "" "" "" ""
#> [36] "" "" "" "" "" "" ""
#> [43] "" "" "" "" "" ""
identifier(bmTrack, "lowest")
#> [1] "ENSMUSE00001699671" "ENSMUSE00001699672" "ENSMUSE00001699669"
#> [4] "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00000535713"
#> [7] "ENSMUSE00000535713" "ENSMUSE00001374993" "ENSMUSE00001031149"
#> [10] "ENSMUSE00001374117" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> [13] "ENSMUSE00001371377" "ENSMUSE00001026592" "ENSMUSE00001371902"
#> [16] "ENSMUSE00001044179" "ENSMUSE00001373136" "ENSMUSE00001092675"
#> [19] "ENSMUSE00001373558" "ENSMUSE00001091498" "ENSMUSE00000507351"
#> [22] "ENSMUSE00001375906" "ENSMUSE00000507351" "ENSMUSE00001746418"
#> [25] "ENSMUSE00001746419" "ENSMUSE00001746416" "ENSMUSE00001746416"
#> [28] "ENSMUSE00001746417" "ENSMUSE00001550915" "ENSMUSE00001550911"
#> [31] "ENSMUSE00001550910" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> [34] "ENSMUSE00001550912" "ENSMUSE00001550912" "ENSMUSE00001550912"
#> [37] "ENSMUSE00001550904" "ENSMUSE00001550905" "ENSMUSE00001550903"
#> [40] "ENSMUSE00001550906" "ENSMUSE00001550906" "ENSMUSE00001550913"
#> [43] "ENSMUSE00001550913" "ENSMUSE00001550907" "ENSMUSE00001550907"
#> [46] "ENSMUSE00001550909" "ENSMUSE00001550916" "ENSMUSE00001550914"
identifier(subTrack) <- "bar"
feature(bmTrack)
#> [1] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [5] "non_coding" "utr5" "protein_coding" "non_coding"
#> [9] "protein_coding" "non_coding" "protein_coding" "protein_coding"
#> [13] "non_coding" "protein_coding" "non_coding" "protein_coding"
#> [17] "non_coding" "protein_coding" "non_coding" "protein_coding"
#> [21] "protein_coding" "non_coding" "utr3" "lncRNA"
#> [25] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [29] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [33] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [37] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [41] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
#> [45] "lncRNA" "lncRNA" "lncRNA" "lncRNA"
feature(subTrack) <- "foo"
exon(bmTrack)
#> [1] "ENSMUSE00001699671" "ENSMUSE00001699672" "ENSMUSE00001699669"
#> [4] "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00000535713"
#> [7] "ENSMUSE00000535713" "ENSMUSE00001374993" "ENSMUSE00001031149"
#> [10] "ENSMUSE00001374117" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> [13] "ENSMUSE00001371377" "ENSMUSE00001026592" "ENSMUSE00001371902"
#> [16] "ENSMUSE00001044179" "ENSMUSE00001373136" "ENSMUSE00001092675"
#> [19] "ENSMUSE00001373558" "ENSMUSE00001091498" "ENSMUSE00000507351"
#> [22] "ENSMUSE00001375906" "ENSMUSE00000507351" "ENSMUSE00001746418"
#> [25] "ENSMUSE00001746419" "ENSMUSE00001746416" "ENSMUSE00001746416"
#> [28] "ENSMUSE00001746417" "ENSMUSE00001550915" "ENSMUSE00001550911"
#> [31] "ENSMUSE00001550910" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> [34] "ENSMUSE00001550912" "ENSMUSE00001550912" "ENSMUSE00001550912"
#> [37] "ENSMUSE00001550904" "ENSMUSE00001550905" "ENSMUSE00001550903"
#> [40] "ENSMUSE00001550906" "ENSMUSE00001550906" "ENSMUSE00001550913"
#> [43] "ENSMUSE00001550913" "ENSMUSE00001550907" "ENSMUSE00001550907"
#> [46] "ENSMUSE00001550909" "ENSMUSE00001550916" "ENSMUSE00001550914"
exon(subTrack) <- letters[seq_len(length(subTrack))]
gene(bmTrack)
#> [1] "ENSMUSG00000139804" "ENSMUSG00000139804" "ENSMUSG00000139804"
#> [4] "ENSMUSG00000139804" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [7] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [10] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [13] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [16] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [19] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> [22] "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000143866"
#> [25] "ENSMUSG00000143866" "ENSMUSG00000143866" "ENSMUSG00000143866"
#> [28] "ENSMUSG00000143866" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [31] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [34] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [37] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [40] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [43] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> [46] "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
gene(subTrack) <- "bar"
symbol(bmTrack)
#> [1] "Gm73608" "Gm73608" "Gm73608" "Gm73608" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [8] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [15] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [22] "Cyp2a12" "Cyp2a12" "Gm74043" "Gm74043" "Gm74043" "Gm74043" "Gm74043"
#> [29] "" "" "" "" "" "" ""
#> [36] "" "" "" "" "" "" ""
#> [43] "" "" "" "" "" ""
symbol(subTrack) <- "foo"
transcript(bmTrack)
#> [1] "ENSMUST00000355538" "ENSMUST00000355539" "ENSMUST00000355538"
#> [4] "ENSMUST00000355539" "ENSMUST00000207016" "ENSMUST00000075552"
#> [7] "ENSMUST00000075552" "ENSMUST00000207016" "ENSMUST00000075552"
#> [10] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000075552"
#> [13] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000207016"
#> [16] "ENSMUST00000075552" "ENSMUST00000207016" "ENSMUST00000075552"
#> [19] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000075552"
#> [22] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000379604"
#> [25] "ENSMUST00000379603" "ENSMUST00000379603" "ENSMUST00000379604"
#> [28] "ENSMUST00000379603" "ENSMUST00000277984" "ENSMUST00000277989"
#> [31] "ENSMUST00000277985" "ENSMUST00000277986" "ENSMUST00000277984"
#> [34] "ENSMUST00000277985" "ENSMUST00000277986" "ENSMUST00000277989"
#> [37] "ENSMUST00000277989" "ENSMUST00000277987" "ENSMUST00000277988"
#> [40] "ENSMUST00000277985" "ENSMUST00000277988" "ENSMUST00000277984"
#> [43] "ENSMUST00000277987" "ENSMUST00000277986" "ENSMUST00000277988"
#> [46] "ENSMUST00000277985" "ENSMUST00000277987" "ENSMUST00000277984"
transcript(subTrack) <- c("foo")
chromosome(subTrack) <- "chr7"
plotTracks(subTrack)
values(bmTrack)
#> feature gene exon transcript
#> 1 lncRNA ENSMUSG00000139804 ENSMUSE00001699671 ENSMUST00000355538
#> 2 lncRNA ENSMUSG00000139804 ENSMUSE00001699672 ENSMUST00000355539
#> 3 lncRNA ENSMUSG00000139804 ENSMUSE00001699669 ENSMUST00000355538
#> 4 lncRNA ENSMUSG00000139804 ENSMUSE00001699670 ENSMUST00000355539
#> 5 non_coding ENSMUSG00000060407 ENSMUSE00001372531 ENSMUST00000207016
#> 6 utr5 ENSMUSG00000060407 ENSMUSE00000535713 ENSMUST00000075552
#> 7 protein_coding ENSMUSG00000060407 ENSMUSE00000535713 ENSMUST00000075552
#> 8 non_coding ENSMUSG00000060407 ENSMUSE00001374993 ENSMUST00000207016
#> 9 protein_coding ENSMUSG00000060407 ENSMUSE00001031149 ENSMUST00000075552
#> 10 non_coding ENSMUSG00000060407 ENSMUSE00001374117 ENSMUST00000207016
#> 11 protein_coding ENSMUSG00000060407 ENSMUSE00001037120 ENSMUST00000075552
#> 12 protein_coding ENSMUSG00000060407 ENSMUSE00001044820 ENSMUST00000075552
#> 13 non_coding ENSMUSG00000060407 ENSMUSE00001371377 ENSMUST00000207016
#> 14 protein_coding ENSMUSG00000060407 ENSMUSE00001026592 ENSMUST00000075552
#> 15 non_coding ENSMUSG00000060407 ENSMUSE00001371902 ENSMUST00000207016
#> 16 protein_coding ENSMUSG00000060407 ENSMUSE00001044179 ENSMUST00000075552
#> 17 non_coding ENSMUSG00000060407 ENSMUSE00001373136 ENSMUST00000207016
#> 18 protein_coding ENSMUSG00000060407 ENSMUSE00001092675 ENSMUST00000075552
#> 19 non_coding ENSMUSG00000060407 ENSMUSE00001373558 ENSMUST00000207016
#> 20 protein_coding ENSMUSG00000060407 ENSMUSE00001091498 ENSMUST00000075552
#> 21 protein_coding ENSMUSG00000060407 ENSMUSE00000507351 ENSMUST00000075552
#> 22 non_coding ENSMUSG00000060407 ENSMUSE00001375906 ENSMUST00000207016
#> 23 utr3 ENSMUSG00000060407 ENSMUSE00000507351 ENSMUST00000075552
#> 24 lncRNA ENSMUSG00000143866 ENSMUSE00001746418 ENSMUST00000379604
#> 25 lncRNA ENSMUSG00000143866 ENSMUSE00001746419 ENSMUST00000379603
#> 26 lncRNA ENSMUSG00000143866 ENSMUSE00001746416 ENSMUST00000379603
#> 27 lncRNA ENSMUSG00000143866 ENSMUSE00001746416 ENSMUST00000379604
#> 28 lncRNA ENSMUSG00000143866 ENSMUSE00001746417 ENSMUST00000379603
#> 29 lncRNA ENSMUSG00000126751 ENSMUSE00001550915 ENSMUST00000277984
#> 30 lncRNA ENSMUSG00000126751 ENSMUSE00001550911 ENSMUST00000277989
#> 31 lncRNA ENSMUSG00000126751 ENSMUSE00001550910 ENSMUST00000277985
#> 32 lncRNA ENSMUSG00000126751 ENSMUSE00001550908 ENSMUST00000277986
#> 33 lncRNA ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277984
#> 34 lncRNA ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277985
#> 35 lncRNA ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277986
#> 36 lncRNA ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277989
#> 37 lncRNA ENSMUSG00000126751 ENSMUSE00001550904 ENSMUST00000277989
#> 38 lncRNA ENSMUSG00000126751 ENSMUSE00001550905 ENSMUST00000277987
#> 39 lncRNA ENSMUSG00000126751 ENSMUSE00001550903 ENSMUST00000277988
#> 40 lncRNA ENSMUSG00000126751 ENSMUSE00001550906 ENSMUST00000277985
#> 41 lncRNA ENSMUSG00000126751 ENSMUSE00001550906 ENSMUST00000277988
#> 42 lncRNA ENSMUSG00000126751 ENSMUSE00001550913 ENSMUST00000277984
#> 43 lncRNA ENSMUSG00000126751 ENSMUSE00001550913 ENSMUST00000277987
#> 44 lncRNA ENSMUSG00000126751 ENSMUSE00001550907 ENSMUST00000277986
#> 45 lncRNA ENSMUSG00000126751 ENSMUSE00001550907 ENSMUST00000277988
#> 46 lncRNA ENSMUSG00000126751 ENSMUSE00001550909 ENSMUST00000277985
#> 47 lncRNA ENSMUSG00000126751 ENSMUSE00001550916 ENSMUST00000277987
#> 48 lncRNA ENSMUSG00000126751 ENSMUSE00001550914 ENSMUST00000277984
#> symbol rank phase
#> 1 Gm73608 1 -1
#> 2 Gm73608 1 -1
#> 3 Gm73608 2 -1
#> 4 Gm73608 2 -1
#> 5 Cyp2a12 1 -1
#> 6 Cyp2a12 1 -1
#> 7 Cyp2a12 1 -1
#> 8 Cyp2a12 2 -1
#> 9 Cyp2a12 2 0
#> 10 Cyp2a12 3 -1
#> 11 Cyp2a12 3 1
#> 12 Cyp2a12 4 1
#> 13 Cyp2a12 4 -1
#> 14 Cyp2a12 5 0
#> 15 Cyp2a12 5 -1
#> 16 Cyp2a12 6 0
#> 17 Cyp2a12 6 -1
#> 18 Cyp2a12 7 1
#> 19 Cyp2a12 7 -1
#> 20 Cyp2a12 8 0
#> 21 Cyp2a12 9 0
#> 22 Cyp2a12 8 -1
#> 23 Cyp2a12 9 -1
#> 24 Gm74043 2 -1
#> 25 Gm74043 3 -1
#> 26 Gm74043 2 -1
#> 27 Gm74043 1 -1
#> 28 Gm74043 1 -1
#> 29 4 -1
#> 30 3 -1
#> 31 4 -1
#> 32 3 -1
#> 33 3 -1
#> 34 3 -1
#> 35 2 -1
#> 36 2 -1
#> 37 1 -1
#> 38 3 -1
#> 39 3 -1
#> 40 2 -1
#> 41 2 -1
#> 42 2 -1
#> 43 2 -1
#> 44 1 -1
#> 45 1 -1
#> 46 1 -1
#> 47 1 -1
#> 48 1 -1
## Grouping
group(bmTrack)
#> [1] "ENSMUST00000355538" "ENSMUST00000355539" "ENSMUST00000355538"
#> [4] "ENSMUST00000355539" "ENSMUST00000207016" "ENSMUST00000075552"
#> [7] "ENSMUST00000075552" "ENSMUST00000207016" "ENSMUST00000075552"
#> [10] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000075552"
#> [13] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000207016"
#> [16] "ENSMUST00000075552" "ENSMUST00000207016" "ENSMUST00000075552"
#> [19] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000075552"
#> [22] "ENSMUST00000207016" "ENSMUST00000075552" "ENSMUST00000379604"
#> [25] "ENSMUST00000379603" "ENSMUST00000379603" "ENSMUST00000379604"
#> [28] "ENSMUST00000379603" "ENSMUST00000277984" "ENSMUST00000277989"
#> [31] "ENSMUST00000277985" "ENSMUST00000277986" "ENSMUST00000277984"
#> [34] "ENSMUST00000277985" "ENSMUST00000277986" "ENSMUST00000277989"
#> [37] "ENSMUST00000277989" "ENSMUST00000277987" "ENSMUST00000277988"
#> [40] "ENSMUST00000277985" "ENSMUST00000277988" "ENSMUST00000277984"
#> [43] "ENSMUST00000277987" "ENSMUST00000277986" "ENSMUST00000277988"
#> [46] "ENSMUST00000277985" "ENSMUST00000277987" "ENSMUST00000277984"
group(subTrack) <- "Group 1"
transcript(subTrack)
#> [1] "Group 1" "Group 1" "Group 1" "Group 1" "Group 1" "Group 1" "Group 1"
#> [8] "Group 1" "Group 1" "Group 1" "Group 1"
plotTracks(subTrack)
## Stacking
stacking(bmTrack)
#> [1] "squish"
stacking(bmTrack) <- "dense"
plotTracks(bmTrack)
## coercion
as(bmTrack, "data.frame")
#> X.seqnames X.start X.end X.width X.strand X.feature
#> 1 chr7 26710082 26710271 190 + lncRNA
#> 2 chr7 26710104 26710297 194 + lncRNA
#> 3 chr7 26710594 26710828 235 + lncRNA
#> 4 chr7 26710594 26710835 242 + lncRNA
#> 5 chr7 26728506 26728707 202 + non_coding
#> 6 chr7 26728515 26728530 16 + utr5
#> 7 chr7 26728531 26728707 177 + protein_coding
#> 8 chr7 26728987 26729149 163 + non_coding
#> 9 chr7 26728987 26729149 163 + protein_coding
#> 10 chr7 26730161 26730310 150 + non_coding
#> 11 chr7 26730161 26730310 150 + protein_coding
#> 12 chr7 26730527 26730687 161 + protein_coding
#> 13 chr7 26730527 26732088 1562 + non_coding
#> 14 chr7 26731912 26732088 177 + protein_coding
#> 15 chr7 26733451 26733589 139 + non_coding
#> 16 chr7 26733451 26733589 139 + protein_coding
#> 17 chr7 26734036 26734223 188 + non_coding
#> 18 chr7 26734036 26734223 188 + protein_coding
#> 19 chr7 26734736 26734877 142 + non_coding
#> 20 chr7 26734736 26734877 142 + protein_coding
#> 21 chr7 26735890 26736071 182 + protein_coding
#> 22 chr7 26735890 26736800 911 + non_coding
#> 23 chr7 26736072 26736257 186 + utr3
#> 24 chr7 26712114 26712395 282 - lncRNA
#> 25 chr7 26712116 26712395 280 - lncRNA
#> 26 chr7 26712517 26712627 111 - lncRNA
#> 27 chr7 26712517 26712627 111 - lncRNA
#> 28 chr7 26716098 26716131 34 - lncRNA
#> 29 chr7 26731751 26732142 392 - lncRNA
#> 30 chr7 26731757 26732142 386 - lncRNA
#> 31 chr7 26731764 26732142 379 - lncRNA
#> 32 chr7 26731767 26732142 376 - lncRNA
#> 33 chr7 26732887 26732995 109 - lncRNA
#> 34 chr7 26732887 26732995 109 - lncRNA
#> 35 chr7 26732887 26732995 109 - lncRNA
#> 36 chr7 26732887 26732995 109 - lncRNA
#> 37 chr7 26733982 26734890 909 - lncRNA
#> 38 chr7 26744497 26744590 94 - lncRNA
#> 39 chr7 26744498 26744590 93 - lncRNA
#> 40 chr7 26747900 26748087 188 - lncRNA
#> 41 chr7 26747900 26748087 188 - lncRNA
#> 42 chr7 26747925 26748087 163 - lncRNA
#> 43 chr7 26747925 26748087 163 - lncRNA
#> 44 chr7 26748392 26748489 98 - lncRNA
#> 45 chr7 26748392 26748489 98 - lncRNA
#> 46 chr7 26748392 26748499 108 - lncRNA
#> 47 chr7 26748392 26748501 110 - lncRNA
#> 48 chr7 26748392 26748507 116 - lncRNA
#> X.gene X.exon X.transcript X.symbol X.rank
#> 1 ENSMUSG00000139804 ENSMUSE00001699671 ENSMUST00000355538 Gm73608 1
#> 2 ENSMUSG00000139804 ENSMUSE00001699672 ENSMUST00000355539 Gm73608 1
#> 3 ENSMUSG00000139804 ENSMUSE00001699669 ENSMUST00000355538 Gm73608 2
#> 4 ENSMUSG00000139804 ENSMUSE00001699670 ENSMUST00000355539 Gm73608 2
#> 5 ENSMUSG00000060407 ENSMUSE00001372531 ENSMUST00000207016 Cyp2a12 1
#> 6 ENSMUSG00000060407 ENSMUSE00000535713 ENSMUST00000075552 Cyp2a12 1
#> 7 ENSMUSG00000060407 ENSMUSE00000535713 ENSMUST00000075552 Cyp2a12 1
#> 8 ENSMUSG00000060407 ENSMUSE00001374993 ENSMUST00000207016 Cyp2a12 2
#> 9 ENSMUSG00000060407 ENSMUSE00001031149 ENSMUST00000075552 Cyp2a12 2
#> 10 ENSMUSG00000060407 ENSMUSE00001374117 ENSMUST00000207016 Cyp2a12 3
#> 11 ENSMUSG00000060407 ENSMUSE00001037120 ENSMUST00000075552 Cyp2a12 3
#> 12 ENSMUSG00000060407 ENSMUSE00001044820 ENSMUST00000075552 Cyp2a12 4
#> 13 ENSMUSG00000060407 ENSMUSE00001371377 ENSMUST00000207016 Cyp2a12 4
#> 14 ENSMUSG00000060407 ENSMUSE00001026592 ENSMUST00000075552 Cyp2a12 5
#> 15 ENSMUSG00000060407 ENSMUSE00001371902 ENSMUST00000207016 Cyp2a12 5
#> 16 ENSMUSG00000060407 ENSMUSE00001044179 ENSMUST00000075552 Cyp2a12 6
#> 17 ENSMUSG00000060407 ENSMUSE00001373136 ENSMUST00000207016 Cyp2a12 6
#> 18 ENSMUSG00000060407 ENSMUSE00001092675 ENSMUST00000075552 Cyp2a12 7
#> 19 ENSMUSG00000060407 ENSMUSE00001373558 ENSMUST00000207016 Cyp2a12 7
#> 20 ENSMUSG00000060407 ENSMUSE00001091498 ENSMUST00000075552 Cyp2a12 8
#> 21 ENSMUSG00000060407 ENSMUSE00000507351 ENSMUST00000075552 Cyp2a12 9
#> 22 ENSMUSG00000060407 ENSMUSE00001375906 ENSMUST00000207016 Cyp2a12 8
#> 23 ENSMUSG00000060407 ENSMUSE00000507351 ENSMUST00000075552 Cyp2a12 9
#> 24 ENSMUSG00000143866 ENSMUSE00001746418 ENSMUST00000379604 Gm74043 2
#> 25 ENSMUSG00000143866 ENSMUSE00001746419 ENSMUST00000379603 Gm74043 3
#> 26 ENSMUSG00000143866 ENSMUSE00001746416 ENSMUST00000379603 Gm74043 2
#> 27 ENSMUSG00000143866 ENSMUSE00001746416 ENSMUST00000379604 Gm74043 1
#> 28 ENSMUSG00000143866 ENSMUSE00001746417 ENSMUST00000379603 Gm74043 1
#> 29 ENSMUSG00000126751 ENSMUSE00001550915 ENSMUST00000277984 4
#> 30 ENSMUSG00000126751 ENSMUSE00001550911 ENSMUST00000277989 3
#> 31 ENSMUSG00000126751 ENSMUSE00001550910 ENSMUST00000277985 4
#> 32 ENSMUSG00000126751 ENSMUSE00001550908 ENSMUST00000277986 3
#> 33 ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277984 3
#> 34 ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277985 3
#> 35 ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277986 2
#> 36 ENSMUSG00000126751 ENSMUSE00001550912 ENSMUST00000277989 2
#> 37 ENSMUSG00000126751 ENSMUSE00001550904 ENSMUST00000277989 1
#> 38 ENSMUSG00000126751 ENSMUSE00001550905 ENSMUST00000277987 3
#> 39 ENSMUSG00000126751 ENSMUSE00001550903 ENSMUST00000277988 3
#> 40 ENSMUSG00000126751 ENSMUSE00001550906 ENSMUST00000277985 2
#> 41 ENSMUSG00000126751 ENSMUSE00001550906 ENSMUST00000277988 2
#> 42 ENSMUSG00000126751 ENSMUSE00001550913 ENSMUST00000277984 2
#> 43 ENSMUSG00000126751 ENSMUSE00001550913 ENSMUST00000277987 2
#> 44 ENSMUSG00000126751 ENSMUSE00001550907 ENSMUST00000277986 1
#> 45 ENSMUSG00000126751 ENSMUSE00001550907 ENSMUST00000277988 1
#> 46 ENSMUSG00000126751 ENSMUSE00001550909 ENSMUST00000277985 1
#> 47 ENSMUSG00000126751 ENSMUSE00001550916 ENSMUST00000277987 1
#> 48 ENSMUSG00000126751 ENSMUSE00001550914 ENSMUST00000277984 1
#> X.phase feature gene exon
#> 1 -1 lncRNA ENSMUSG00000139804 ENSMUSE00001699671
#> 2 -1 lncRNA ENSMUSG00000139804 ENSMUSE00001699672
#> 3 -1 lncRNA ENSMUSG00000139804 ENSMUSE00001699669
#> 4 -1 lncRNA ENSMUSG00000139804 ENSMUSE00001699670
#> 5 -1 non_coding ENSMUSG00000060407 ENSMUSE00001372531
#> 6 -1 utr5 ENSMUSG00000060407 ENSMUSE00000535713
#> 7 -1 protein_coding ENSMUSG00000060407 ENSMUSE00000535713
#> 8 -1 non_coding ENSMUSG00000060407 ENSMUSE00001374993
#> 9 0 protein_coding ENSMUSG00000060407 ENSMUSE00001031149
#> 10 -1 non_coding ENSMUSG00000060407 ENSMUSE00001374117
#> 11 1 protein_coding ENSMUSG00000060407 ENSMUSE00001037120
#> 12 1 protein_coding ENSMUSG00000060407 ENSMUSE00001044820
#> 13 -1 non_coding ENSMUSG00000060407 ENSMUSE00001371377
#> 14 0 protein_coding ENSMUSG00000060407 ENSMUSE00001026592
#> 15 -1 non_coding ENSMUSG00000060407 ENSMUSE00001371902
#> 16 0 protein_coding ENSMUSG00000060407 ENSMUSE00001044179
#> 17 -1 non_coding ENSMUSG00000060407 ENSMUSE00001373136
#> 18 1 protein_coding ENSMUSG00000060407 ENSMUSE00001092675
#> 19 -1 non_coding ENSMUSG00000060407 ENSMUSE00001373558
#> 20 0 protein_coding ENSMUSG00000060407 ENSMUSE00001091498
#> 21 0 protein_coding ENSMUSG00000060407 ENSMUSE00000507351
#> 22 -1 non_coding ENSMUSG00000060407 ENSMUSE00001375906
#> 23 -1 utr3 ENSMUSG00000060407 ENSMUSE00000507351
#> 24 -1 lncRNA ENSMUSG00000143866 ENSMUSE00001746418
#> 25 -1 lncRNA ENSMUSG00000143866 ENSMUSE00001746419
#> 26 -1 lncRNA ENSMUSG00000143866 ENSMUSE00001746416
#> 27 -1 lncRNA ENSMUSG00000143866 ENSMUSE00001746416
#> 28 -1 lncRNA ENSMUSG00000143866 ENSMUSE00001746417
#> 29 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550915
#> 30 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550911
#> 31 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550910
#> 32 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550908
#> 33 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550912
#> 34 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550912
#> 35 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550912
#> 36 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550912
#> 37 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550904
#> 38 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550905
#> 39 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550903
#> 40 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550906
#> 41 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550906
#> 42 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550913
#> 43 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550913
#> 44 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550907
#> 45 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550907
#> 46 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550909
#> 47 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550916
#> 48 -1 lncRNA ENSMUSG00000126751 ENSMUSE00001550914
#> transcript symbol rank phase
#> 1 ENSMUST00000355538 Gm73608 1 -1
#> 2 ENSMUST00000355539 Gm73608 1 -1
#> 3 ENSMUST00000355538 Gm73608 2 -1
#> 4 ENSMUST00000355539 Gm73608 2 -1
#> 5 ENSMUST00000207016 Cyp2a12 1 -1
#> 6 ENSMUST00000075552 Cyp2a12 1 -1
#> 7 ENSMUST00000075552 Cyp2a12 1 -1
#> 8 ENSMUST00000207016 Cyp2a12 2 -1
#> 9 ENSMUST00000075552 Cyp2a12 2 0
#> 10 ENSMUST00000207016 Cyp2a12 3 -1
#> 11 ENSMUST00000075552 Cyp2a12 3 1
#> 12 ENSMUST00000075552 Cyp2a12 4 1
#> 13 ENSMUST00000207016 Cyp2a12 4 -1
#> 14 ENSMUST00000075552 Cyp2a12 5 0
#> 15 ENSMUST00000207016 Cyp2a12 5 -1
#> 16 ENSMUST00000075552 Cyp2a12 6 0
#> 17 ENSMUST00000207016 Cyp2a12 6 -1
#> 18 ENSMUST00000075552 Cyp2a12 7 1
#> 19 ENSMUST00000207016 Cyp2a12 7 -1
#> 20 ENSMUST00000075552 Cyp2a12 8 0
#> 21 ENSMUST00000075552 Cyp2a12 9 0
#> 22 ENSMUST00000207016 Cyp2a12 8 -1
#> 23 ENSMUST00000075552 Cyp2a12 9 -1
#> 24 ENSMUST00000379604 Gm74043 2 -1
#> 25 ENSMUST00000379603 Gm74043 3 -1
#> 26 ENSMUST00000379603 Gm74043 2 -1
#> 27 ENSMUST00000379604 Gm74043 1 -1
#> 28 ENSMUST00000379603 Gm74043 1 -1
#> 29 ENSMUST00000277984 4 -1
#> 30 ENSMUST00000277989 3 -1
#> 31 ENSMUST00000277985 4 -1
#> 32 ENSMUST00000277986 3 -1
#> 33 ENSMUST00000277984 3 -1
#> 34 ENSMUST00000277985 3 -1
#> 35 ENSMUST00000277986 2 -1
#> 36 ENSMUST00000277989 2 -1
#> 37 ENSMUST00000277989 1 -1
#> 38 ENSMUST00000277987 3 -1
#> 39 ENSMUST00000277988 3 -1
#> 40 ENSMUST00000277985 2 -1
#> 41 ENSMUST00000277988 2 -1
#> 42 ENSMUST00000277984 2 -1
#> 43 ENSMUST00000277987 2 -1
#> 44 ENSMUST00000277986 1 -1
#> 45 ENSMUST00000277988 1 -1
#> 46 ENSMUST00000277985 1 -1
#> 47 ENSMUST00000277987 1 -1
#> 48 ENSMUST00000277984 1 -1
as(bmTrack, "UCSCData")
#> UCSC track 'foo'
#> UCSCData object with 12 ranges and 6 metadata columns:
#> seqnames ranges strand | id name
#> <Rle> <IRanges> <Rle> | <character> <character>
#> [1] chr7 26728515-26736257 + | ENSMUST00000075552 Cyp2a12
#> [2] chr7 26728506-26736800 + | ENSMUST00000207016 Cyp2a12
#> [3] chr7 26731751-26748507 - | ENSMUST00000277984
#> [4] chr7 26731764-26748499 - | ENSMUST00000277985
#> [5] chr7 26731767-26748489 - | ENSMUST00000277986
#> ... ... ... ... . ... ...
#> [8] chr7 26731757-26734890 - | ENSMUST00000277989
#> [9] chr7 26710082-26710828 + | ENSMUST00000355538 Gm73608
#> [10] chr7 26710104-26710835 + | ENSMUST00000355539 Gm73608
#> [11] chr7 26712116-26716131 - | ENSMUST00000379603 Gm74043
#> [12] chr7 26712114-26712627 - | ENSMUST00000379604 Gm74043
#> itemRgb blockCount blockSizes blockStarts
#> <character> <numeric> <character> <character>
#> [1] orange 11 16,177,163,150,161,1.. 0,16,472,1646,2012,3..
#> [2] #FFD58A 8 202,163,150,1562,139.. 0,481,1655,2021,4945..
#> [3] #FFD58A 4 392,109,163,116 0,1136,16174,16641
#> [4] #FFD58A 4 379,109,188,108 0,1123,16136,16628
#> [5] #FFD58A 3 376,109,98 0,1120,16625
#> ... ... ... ... ...
#> [8] #FFD58A 3 386,109,909 0,1130,2225
#> [9] #FFD58A 2 190,235 0,512
#> [10] #FFD58A 2 194,242 0,490
#> [11] #FFD58A 3 280,111,34 0,401,3982
#> [12] #FFD58A 2 282,111 0,403
#> -------
#> seqinfo: 1 sequence from an unspecified genome; no seqlengths
## HTML image map
coords(bmTrack)
#> NULL
tags(bmTrack)
#> NULL
bmTrack <- plotTracks(bmTrack)$foo
coords(bmTrack)
#> x1 y1 x2 y2
#> ENSMUSE00001699671 38.32190 64.50 40.42988 415.50
#> ENSMUSE00001699669 44.03241 64.50 46.64229 415.50
#> ENSMUSE00001699672 38.56727 64.50 40.71987 415.50
#> ENSMUSE00001699670 44.03241 64.50 46.72037 415.50
#> ENSMUSE00001372531 243.81116 64.50 246.05299 415.50
#> ENSMUSE00001374993 249.17592 64.50 250.98276 415.50
#> ENSMUSE00001374117 262.26995 64.50 263.93180 415.50
#> ENSMUSE00001371377 266.35208 64.50 283.76245 415.50
#> ENSMUSE00001371902 298.96446 64.50 300.50363 415.50
#> ENSMUSE00001373136 305.48917 64.50 307.57485 415.50
#> ENSMUSE00001373558 313.29651 64.50 314.86914 415.50
#> ENSMUSE00001375906 326.16748 64.50 336.31702 415.50
#> ENSMUSE00001031149 249.17592 64.50 250.98276 415.50
#> ENSMUSE00001037120 262.26995 64.50 263.93180 415.50
#> ENSMUSE00001044820 266.35208 64.50 268.13661 415.50
#> ENSMUSE00001026592 281.79946 64.50 283.76245 415.50
#> ENSMUSE00001044179 298.96446 64.50 300.50363 415.50
#> ENSMUSE00001092675 305.48917 64.50 307.57485 415.50
#> ENSMUSE00001091498 313.29651 64.50 314.86914 415.50
#> ENSMUSE00000507351 326.16748 64.50 328.18623 415.50
#> ENSMUSE00000507351.1 328.19739 152.25 330.26076 327.75
#> ENSMUSE00001746418 60.98550 64.50 64.11959 415.50
#> ENSMUSE00001746416 65.48030 64.50 66.70716 415.50
#> ENSMUSE00001746419 61.00780 64.50 64.11959 415.50
#> ENSMUSE00001746416.1 65.48030 64.50 66.70716 415.50
#> ENSMUSE00001746417 105.10814 64.50 106.10079 415.50
#> ENSMUSE00001550915 280.00377 64.50 284.36473 415.50
#> ENSMUSE00001550912 292.67398 64.50 293.87854 415.50
#> ENSMUSE00001550913 460.39801 64.50 462.20485 415.50
#> ENSMUSE00001550914 465.60662 64.50 466.88926 415.50
#> ENSMUSE00001550911 280.07069 64.50 284.36473 415.50
#> ENSMUSE00001550912.1 292.67398 64.50 293.87854 415.50
#> ENSMUSE00001550904 304.88689 64.50 315.01413 415.50
#> ENSMUSE00001550910 280.14877 64.50 284.36473 415.50
#> ENSMUSE00001550912.2 292.67398 64.50 293.87854 415.50
#> ENSMUSE00001550906 460.11918 64.50 462.20485 415.50
#> ENSMUSE00001550909 465.60662 64.50 466.80003 415.50
#> ENSMUSE00001550908 280.18223 64.50 284.36473 415.50
#> ENSMUSE00001550912.3 292.67398 64.50 293.87854 415.50
#> ENSMUSE00001550907 465.60662 64.50 466.68850 415.50
#> ENSMUSE00001550905 422.16434 64.50 423.20160 415.50
#> ENSMUSE00001550913.1 460.39801 64.50 462.20485 415.50
#> ENSMUSE00001550916 465.60662 64.50 466.82234 415.50
#> ENSMUSE00001550903 422.17549 64.50 423.20160 415.50
#> ENSMUSE00001550906.1 460.11918 64.50 462.20485 415.50
#> ENSMUSE00001550907.1 465.60662 64.50 466.68850 415.50
#> ENSMUSE00001372327 442.48573 64.50 451.55341 415.50
#> ENSMUSE00001464755 460.39801 64.50 462.20485 415.50
#> ENSMUSE00001463658 464.42437 64.50 466.39851 415.50
#> ENSMUSE00000535713 243.49887 64.50 246.05299 415.50
tags(bmTrack)
#> $fill
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "orange" "orange" "orange"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "orange" "orange" "orange"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "orange" "orange" "orange"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "#FFD58A" "#FFD58A" "#FFD58A"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "#FFD58A" "#FFD58A"
#>
#> $strand
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "+" "+" "+"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "+" "+" "+"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "+" "+" "+"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "+" "+" "+"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "+" "+" "+"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "+" "+" "+"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "+" "+" "+"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "-" "-" "-"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "-" "-" "-"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "-" "-" "-"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "-" "-" "-"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "-" "-" "-"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "-" "-" "-"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "-" "-" "-"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "-" "-" "-"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "-" "+" "-"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "-" "+"
#>
#> $text
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUSE00001699671" "ENSMUSE00001699669" "ENSMUSE00001699672"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00001374993"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUSE00001374117" "ENSMUSE00001371377" "ENSMUSE00001371902"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUSE00001373136" "ENSMUSE00001373558" "ENSMUSE00001375906"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUSE00001031149" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUSE00001026592" "ENSMUSE00001044179" "ENSMUSE00001092675"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUSE00001091498" "ENSMUSE00000507351" "ENSMUSE00000507351"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUSE00001746418" "ENSMUSE00001746416" "ENSMUSE00001746419"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUSE00001746416" "ENSMUSE00001746417" "ENSMUSE00001550915"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUSE00001550912" "ENSMUSE00001550913" "ENSMUSE00001550914"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUSE00001550911" "ENSMUSE00001550912" "ENSMUSE00001550904"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUSE00001550910" "ENSMUSE00001550912" "ENSMUSE00001550906"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUSE00001550909" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUSE00001550907" "ENSMUSE00001550905" "ENSMUSE00001550913"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUSE00001550916" "ENSMUSE00001550903" "ENSMUSE00001550906"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUSE00001550907" "ENSMUSE00001372327" "ENSMUSE00001464755"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUSE00001463658" "ENSMUSE00000535713"
#>
#> $start
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "26710082" "26710594" "26710104"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "26710594" "26728506" "26728987"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "26730161" "26730527" "26733451"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "26734036" "26734736" "26735890"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "26728987" "26730161" "26730527"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "26731912" "26733451" "26734036"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "26734736" "26735890" "26736072"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "26712114" "26712517" "26712116"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "26712517" "26716070" "26731751"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "26732887" "26747925" "26748392"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "26731757" "26732887" "26733982"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "26731764" "26732887" "26747900"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "26748392" "26731767" "26732887"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "26748392" "26744497" "26747925"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "26748392" "26744498" "26747900"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "26748392" "26746319" "26747925"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "26748286" "26728478"
#>
#> $end
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "26710271" "26710828" "26710297"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "26710835" "26728707" "26729149"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "26730310" "26732088" "26733589"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "26734223" "26734877" "26736800"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "26729149" "26730310" "26730687"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "26732088" "26733589" "26734223"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "26734877" "26736071" "26736257"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "26712395" "26712627" "26712395"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "26712627" "26716159" "26732142"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "26732995" "26748087" "26748507"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "26732142" "26732995" "26734890"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "26732142" "26732995" "26748087"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "26748499" "26732142" "26732995"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "26748489" "26744590" "26748087"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "26748501" "26744590" "26748087"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "26748489" "26747132" "26748087"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "26748463" "26728707"
#>
#> $density
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> NA NA NA
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> NA NA NA
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> NA NA NA
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> NA NA NA
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> NA NA NA
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> NA NA NA
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> NA NA NA
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> NA NA NA
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> NA NA NA
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> NA NA NA
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> NA NA NA
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> NA NA NA
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> NA NA NA
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> NA NA NA
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> NA NA NA
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> NA NA NA
#> ENSMUSE00001463658 ENSMUSE00000535713
#> NA NA
#>
#> $gdensity
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> NA NA NA
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> NA NA NA
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> NA NA NA
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> NA NA NA
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> NA NA NA
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> NA NA NA
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> NA NA NA
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> NA NA NA
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> NA NA NA
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> NA NA NA
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> NA NA NA
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> NA NA NA
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> NA NA NA
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> NA NA NA
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> NA NA NA
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> NA "1" NA
#> ENSMUSE00001463658 ENSMUSE00000535713
#> NA "1"
#>
#> $feature
#> ENSMUSE00001699671 ENSMUSE00001699669
#> "lncRNA" "lncRNA"
#> ENSMUSE00001699672 ENSMUSE00001699670
#> "lncRNA" "lncRNA"
#> ENSMUSE00001372531 ENSMUSE00001374993
#> "non_coding" "non_coding"
#> ENSMUSE00001374117 ENSMUSE00001371377
#> "non_coding" "non_coding"
#> ENSMUSE00001371902 ENSMUSE00001373136
#> "non_coding" "non_coding"
#> ENSMUSE00001373558 ENSMUSE00001375906
#> "non_coding" "non_coding"
#> ENSMUSE00001031149 ENSMUSE00001037120
#> "protein_coding" "protein_coding"
#> ENSMUSE00001044820 ENSMUSE00001026592
#> "protein_coding" "protein_coding"
#> ENSMUSE00001044179 ENSMUSE00001092675
#> "protein_coding" "protein_coding"
#> ENSMUSE00001091498 ENSMUSE00000507351
#> "protein_coding" "protein_coding"
#> ENSMUSE00000507351.1 ENSMUSE00001746418
#> "utr3" "lncRNA"
#> ENSMUSE00001746416 ENSMUSE00001746419
#> "lncRNA" "lncRNA"
#> ENSMUSE00001746416.1 ENSMUSE00001746417
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550915 ENSMUSE00001550912
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550913 ENSMUSE00001550914
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550911 ENSMUSE00001550912.1
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550904 ENSMUSE00001550910
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550912.2 ENSMUSE00001550906
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550909 ENSMUSE00001550908
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550912.3 ENSMUSE00001550907
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550905 ENSMUSE00001550913.1
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550916 ENSMUSE00001550903
#> "lncRNA" "lncRNA"
#> ENSMUSE00001550906.1 ENSMUSE00001550907.1
#> "lncRNA" "lncRNA"
#> ENSMUSE00001372327 ENSMUSE00001464755
#> "processed_pseudogene" "transcribed_unprocessed_pseudogene"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "transcribed_unprocessed_pseudogene" "composite"
#>
#> $id
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> NA NA NA
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> NA NA NA
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> NA NA NA
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> NA NA NA
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> NA NA NA
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> NA NA NA
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> NA NA NA
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> NA NA NA
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> NA NA NA
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> NA NA NA
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> NA NA NA
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> NA NA NA
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> NA NA NA
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> NA NA NA
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> NA NA NA
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> NA NA NA
#> ENSMUSE00001463658 ENSMUSE00000535713
#> NA NA
#>
#> $gene
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUSG00000139804" "ENSMUSG00000139804" "ENSMUSG00000139804"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUSG00000139804" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUSG00000060407" "ENSMUSG00000060407" "ENSMUSG00000060407"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUSG00000143866" "ENSMUSG00000143866" "ENSMUSG00000143866"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUSG00000143866" "ENSMUSG00000143866" "ENSMUSG00000126751"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUSG00000126751" "ENSMUSG00000126751" "ENSMUSG00000126751"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUSG00000126751" "ENSMUSG00000108637" "ENSMUSG00000118450"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUSG00000118450" "ENSMUSG00000060407"
#>
#> $exon
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUSE00001699671" "ENSMUSE00001699669" "ENSMUSE00001699672"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00001374993"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUSE00001374117" "ENSMUSE00001371377" "ENSMUSE00001371902"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUSE00001373136" "ENSMUSE00001373558" "ENSMUSE00001375906"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUSE00001031149" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUSE00001026592" "ENSMUSE00001044179" "ENSMUSE00001092675"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUSE00001091498" "ENSMUSE00000507351" "ENSMUSE00000507351"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUSE00001746418" "ENSMUSE00001746416" "ENSMUSE00001746419"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUSE00001746416" "ENSMUSE00001746417" "ENSMUSE00001550915"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUSE00001550912" "ENSMUSE00001550913" "ENSMUSE00001550914"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUSE00001550911" "ENSMUSE00001550912" "ENSMUSE00001550904"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUSE00001550910" "ENSMUSE00001550912" "ENSMUSE00001550906"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUSE00001550909" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUSE00001550907" "ENSMUSE00001550905" "ENSMUSE00001550913"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUSE00001550916" "ENSMUSE00001550903" "ENSMUSE00001550906"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUSE00001550907" "ENSMUSE00001372327" "ENSMUSE00001464755"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUSE00001463658" "ENSMUSE00000535713"
#>
#> $transcript
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUST00000355538" "ENSMUST00000355538" "ENSMUST00000355539"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUST00000355539" "ENSMUST00000207016" "ENSMUST00000207016"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUST00000207016" "ENSMUST00000207016" "ENSMUST00000207016"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUST00000207016" "ENSMUST00000207016" "ENSMUST00000207016"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUST00000075552" "ENSMUST00000075552" "ENSMUST00000075552"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUST00000075552" "ENSMUST00000075552" "ENSMUST00000075552"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUST00000075552" "ENSMUST00000075552" "ENSMUST00000075552"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUST00000379604" "ENSMUST00000379604" "ENSMUST00000379603"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUST00000379603" "ENSMUST00000379603" "ENSMUST00000277984"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUST00000277984" "ENSMUST00000277984" "ENSMUST00000277984"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUST00000277989" "ENSMUST00000277989" "ENSMUST00000277989"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUST00000277985" "ENSMUST00000277985" "ENSMUST00000277985"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUST00000277985" "ENSMUST00000277986" "ENSMUST00000277986"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUST00000277986" "ENSMUST00000277987" "ENSMUST00000277987"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUST00000277987" "ENSMUST00000277988" "ENSMUST00000277988"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUST00000277988" "ENSMUST00000206897" "ENSMUST00000238516"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUST00000238516" "ENSMUST00000075552"
#>
#> $symbol
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "Gm73608" "Gm73608" "Gm73608"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "Gm73608" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "Gm74043" "Gm74043" "Gm74043"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "Gm74043" "Gm74043" ""
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "" "" ""
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "" "" ""
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "" "" ""
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "" "" ""
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "" "" ""
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "" "" ""
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "" "Gm4290" "Gm50480"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "Gm50480" "Cyp2a12"
#>
#> $rank
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "1" "2" "1"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "2" "1" "2"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "3" "4" "5"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "6" "7" "8"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "2" "3" "4"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "5" "6" "7"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "8" "9" "9"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "2" "1" "3"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "2" "1" "4"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "3" "2" "1"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "3" "2" "1"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "4" "3" "2"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "1" "3" "2"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "1" "3" "2"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "1" "3" "2"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "1" "1" "2"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "1" "1"
#>
#> $exonId
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUSE00001699671" "ENSMUSE00001699669" "ENSMUSE00001699672"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00001374993"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUSE00001374117" "ENSMUSE00001371377" "ENSMUSE00001371902"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUSE00001373136" "ENSMUSE00001373558" "ENSMUSE00001375906"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUSE00001031149" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUSE00001026592" "ENSMUSE00001044179" "ENSMUSE00001092675"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUSE00001091498" "ENSMUSE00000507351" "ENSMUSE00000507351"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUSE00001746418" "ENSMUSE00001746416" "ENSMUSE00001746419"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUSE00001746416" "ENSMUSE00001746417" "ENSMUSE00001550915"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUSE00001550912" "ENSMUSE00001550913" "ENSMUSE00001550914"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUSE00001550911" "ENSMUSE00001550912" "ENSMUSE00001550904"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUSE00001550910" "ENSMUSE00001550912" "ENSMUSE00001550906"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUSE00001550909" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUSE00001550907" "ENSMUSE00001550905" "ENSMUSE00001550913"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUSE00001550916" "ENSMUSE00001550903" "ENSMUSE00001550906"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUSE00001550907" "ENSMUSE00001372327" "ENSMUSE00001464755"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUSE00001463658" "ENSMUSE00000535713"
#>
#> $origExonId
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "ENSMUSE00001699671" "ENSMUSE00001699669" "ENSMUSE00001699672"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "ENSMUSE00001699670" "ENSMUSE00001372531" "ENSMUSE00001374993"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "ENSMUSE00001374117" "ENSMUSE00001371377" "ENSMUSE00001371902"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "ENSMUSE00001373136" "ENSMUSE00001373558" "ENSMUSE00001375906"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "ENSMUSE00001031149" "ENSMUSE00001037120" "ENSMUSE00001044820"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "ENSMUSE00001026592" "ENSMUSE00001044179" "ENSMUSE00001092675"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "ENSMUSE00001091498" "ENSMUSE00000507351" "ENSMUSE00000507351"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "ENSMUSE00001746418" "ENSMUSE00001746416" "ENSMUSE00001746419"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "ENSMUSE00001746416" "ENSMUSE00001746417" "ENSMUSE00001550915"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "ENSMUSE00001550912" "ENSMUSE00001550913" "ENSMUSE00001550914"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "ENSMUSE00001550911" "ENSMUSE00001550912" "ENSMUSE00001550904"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "ENSMUSE00001550910" "ENSMUSE00001550912" "ENSMUSE00001550906"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "ENSMUSE00001550909" "ENSMUSE00001550908" "ENSMUSE00001550912"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "ENSMUSE00001550907" "ENSMUSE00001550905" "ENSMUSE00001550913"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "ENSMUSE00001550916" "ENSMUSE00001550903" "ENSMUSE00001550906"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "ENSMUSE00001550907" "ENSMUSE00001372327" "ENSMUSE00001464755"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "ENSMUSE00001463658" "ENSMUSE00000535713"
#>
#> $col
#> ENSMUSE00001699671 ENSMUSE00001699669 ENSMUSE00001699672
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001699670 ENSMUSE00001372531 ENSMUSE00001374993
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001374117 ENSMUSE00001371377 ENSMUSE00001371902
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001373136 ENSMUSE00001373558 ENSMUSE00001375906
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001031149 ENSMUSE00001037120 ENSMUSE00001044820
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001026592 ENSMUSE00001044179 ENSMUSE00001092675
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001091498 ENSMUSE00000507351 ENSMUSE00000507351.1
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001746418 ENSMUSE00001746416 ENSMUSE00001746419
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001746416.1 ENSMUSE00001746417 ENSMUSE00001550915
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550912 ENSMUSE00001550913 ENSMUSE00001550914
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550911 ENSMUSE00001550912.1 ENSMUSE00001550904
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550910 ENSMUSE00001550912.2 ENSMUSE00001550906
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550909 ENSMUSE00001550908 ENSMUSE00001550912.3
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550907 ENSMUSE00001550905 ENSMUSE00001550913.1
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550916 ENSMUSE00001550903 ENSMUSE00001550906.1
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001550907.1 ENSMUSE00001372327 ENSMUSE00001464755
#> "darkgray" "darkgray" "darkgray"
#> ENSMUSE00001463658 ENSMUSE00000535713
#> "darkgray" "darkgray"
#>
#> $title
#> [1] "Gm73608" "Gm73608" "Gm73608" "Gm73608" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [8] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [15] "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12" "Cyp2a12"
#> [22] "Gm74043" "Gm74043" "Gm74043" "Gm74043" "Gm74043" "" ""
#> [29] "" "" "" "" "" "" ""
#> [36] "" "" "" "" "" "" ""
#> [43] "" "" "" "" "Gm4290" "Gm50480" "Gm50480"
#> [50] "Cyp2a12"
#>