The RNAStringSet-based version of the SequenceTrack class — SequenceRNAStringSetTrack-class • Gviz

The RNAStringSet-based version of the SequenceTrack class

# S4 method for class 'SequenceRNAStringSetTrack'
initialize(.Object, sequence, ...)

Arguments

.Object: The object skeleton passed on by new() during class instantiation, to be filled in by the initialize method.
sequence: An RNAStringSet object with one RNA sequence per chromosome. The names have to match the chromosome identifiers.
...: Additional arguments.

Functions

initialize(SequenceRNAStringSetTrack): Initialize the sequence slot (defaulting to an empty RNAStringSet if none is supplied) before deferring to the SequenceTrack initializer for the remaining slots.

Slots

sequence: A RNAStringSet object containing the sequence data, with one element per chromosome.