45038-01 – Lecture with exercises (2 CP) / Vorlesung mit Übungen (2 KP)

Time: Wednesday 14:15 - 16:00

Venue: Biozentrum, Hörsaal 102

No. Date Room Teacher Title Code, Datasets
1 28.02.2018 Biozentrum, Hörsaal 102 Florian Revision of basic R/RStudio usage mice_data.csv, secretin.csv
2 07.03.2018 Biozentrum, Hörsaal 102 Florian Differential gene expression analysis with GEO2R GSE27114_script.R
3 14.03.2018 Biozentrum, Hörsaal 102 Robert Differential gene expression analysis (microarray data) GSE27114_GPL1261_eSet_RMA.rds, GSE27114_GPL6246_eSet_RMA.rds
4 21.03.2018 Biozentrum, Hörsaal 102 Robert Bioconductor annotation packages GSE27114_GPL1261_eSet_RMA.rds, geneSet.txt
5 28.03.2018 Biozentrum, Hörsaal 102 Pan Overview of RNAseq
6 04.04.2018 Biozentrum, Hörsaal 102 Atul RNAseq I: from raw data to count data 06_counts.txt, 03_counts.txt, 03_counts_st.txt
7 11.04.2018 Biozentrum, Hörsaal 102 Atul RNAseq II: starting from count data 06_counts.txt, mouse_H_v5p2.rdata, mouse_c2_v5p2.rdata
8 18.04.2018 Biozentrum, Hörsaal 102 Julien Recapitulation and Q/A DGE.rds
9 25.04.2018 Biozentrum, Hörsaal 102 Pan Introduction to single cell RNAseq umi_counts_noERCC.rds, read_counts_noERCC.rds, Kolodziejczyk_counts.rds
10 02.05.2018 Biozentrum, Hörsaal 102 Sarah rtracklayer and GenomicRanges packages cgi.bed, mm9ToMm10.over.chain, ChIP_promoter_counts.rds
11 09.05.2018 Biozentrum, Hörsaal 102 Michael ChIPseq I: concepts 11_ChIPseq_coverage_interactive.Rmd or 11_ChIPseq_coverage_shinyApp.R
12 16.05.2018 Biozentrum, Hörsaal 102 Michael ChIPseq II: example ChIP_promoter_counts.rds, 03_counts_st.txt
13 23.05.2018 Biozentrum, Hörsaal 102 Lukas Integrating RNAseq and ChIPseq ChIPdata_2kb_chr19.rds, ChIPdata_promoters.rds, ChIPdata_geneBodies.rds, RNAdata_promoters.rds
14 30.05.2018 Biozentrum, Hörsaal 102 Lukas ChIPseq exercises with solutions ChIPdata_Ren_2kb_chr19.rds, ChIPdata_Schubeler_K4me1_2kb_chr19.rds

For further information, please contact your teacher.